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1

Metabolic profiling, metabolomic and metabonomic procedures for NMR spectroscopy of urine, plasma, serum and tissue extracts

Beckonert, Olaf, Keun, Hector C, Ebbels, Timothy M D, Bundy, Jacob, Holmes, Elaine, Lindon, John C, Nicholson, Jeremy K

Journal:

Nature Protocols

Year:

2007

Language:

english

File:

PDF, 418 KB

english, 2007

2

Discrimination of pathogenic clinical isolates and laboratory strains of Bacillus cereus by NMR-based metabolomic profiling

Jacob G. Bundy, Tara L. Willey, Rachel S. Castell, David J. Ellar, Kevin M. Brindle

Journal:

FEMS Microbiology Letters

Year:

2005

Language:

english

File:

PDF, 371 KB

english, 2005

3

A software complement to AMDIS for processing GC-MS metabolomic data

Volker Behrends, Gregory D. Tredwell, Jacob G. Bundy

Journal:

Analytical Biochemistry

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

4

Combined microbial community level and single species biosensor responses to monitor recovery of oil polluted soil

Jacob G Bundy, Graeme I Paton, Colin D Campbell

Journal:

Soil Biology and Biochemistry

Year:

2004

Language:

english

File:

PDF, 215 KB

english, 2004

5

Pseudomonas aeruginosa infection in cystic fibrosis: pathophysiological mechanisms and therapeutic approaches

Lund-Palau, Helena, Turnbull, Andrew R., Bush, Andrew, Bardin, Emmanuelle, Cameron, Loren, Soren, Odel, Wierre-Gore, Natasha, Alton, Eric W. F. W., Bundy, Jacob G., Connett, Gary, Faust, Saul N., Fill

Journal:

Expert Review of Respiratory Medicine

Year:

2016

Language:

english

File:

PDF, 1.68 MB

english, 2016

6

Endovascular Transpulmonary Retrieval of a Migrated Amplatzer Vascular Plug Following Balloon-Occluded Retrograde Transvenous Obliteration

Bundy, Jacob J., Hussain, Jawad, Patel, Nishant, Khayat, Mamdouh, Chick, Jeffrey Forris Beecham, Gemmete, Joseph J., Srinivasa, Ravi N.

Journal:

Annals of Vascular Surgery

Year:

2018

Language:

english

File:

PDF, 2.60 MB

english, 2018

7

CRT-400.02 The Impact of Patient BMI on Radiation Dose Among Scrub Technologists During Cardiac Catheterization

Refahiyat, Lahdan, Clarey, Austin, Bundy, Jacob, Mandieka, Edwin, Benavides, David, Crane, Thomas, Maragiri, Sheetal, Osip, Erica, Pardington, Emily, Samani, Soroush, Mulder, Abbey, Brock, Taylor Ten,

Journal:

Journal of the American College of Cardiology: Cardiovascular Interventions

Year:

2018

Language:

english

File:

PDF, 140 KB

english, 2018

8

Regarding “Treatment of postoperative high-volume lymphatic complications using isosulfan blue”

Fisher, Jason A., Bundy, Jacob J., Gemmete, Joseph J., Srinivasa, Ravi N., Chick, Jeffrey Forris Beecham

Journal:

Journal of Vascular Surgery: Venous and Lymphatic Disorders

Year:

2019

Language:

english

File:

PDF, 95 KB

english, 2019

9

Metabonomic assessment of toxicity of 4-fluoroaniline, 3,5-difluoroaniline and 2-fluoro-4-methylaniline to the earthworm Eisenia veneta (rosa): Identification of new endogenous biomarkers

Jacob G. Bundy, Eva M. Lenz, Nigel J. Bailey, Claire L. Gavaghan, Claus Svendsen, David Spurgeon, Peter K. Hankard, Daniel Osborn, Jason M. Weeks, Sunia A. Trauger, Paul Speir, Ian Sanders, John C Lin

Journal:

Environmental Toxicology and Chemistry

Year:

2002

Language:

english

File:

PDF, 108 KB

english, 2002

10

Corneal epithelial adhesion strength to tethered-protein/peptide modified hydrogel surfaces

Christopher Wallace, Jean T. Jacob, Albert Stoltz, Jingjing Bi, Kirk Bundy

Journal:

Journal of Biomedical Materials Research Part A

Year:

2005

Language:

english

File:

PDF, 512 KB

english, 2005

11

'Systems toxicology' approach identifies coordinated metabolic responses to copper in a terrestrial non-model invertebrate, the earthwormLumbricus rubellus

Jacob G Bundy, Jasmin K Sidhu, Faisal Rana, David J Spurgeon, Claus Svendsen, Jodie F Wren, Stephen R Stürzenbaum, A John Morgan, Peter Kille

Journal:

Year:

2008

Language:

english

File:

PDF, 2.22 MB

english, 2008

12

A metabolic signature of long life inCaenorhabditis elegans

Silke Fuchs, Jacob G Bundy, Sarah K Davies, Jonathan M Viney, Jonathan S Swire, Armand M Leroi

Journal:

Year:

2010

Language:

english

File:

PDF, 2.31 MB

english, 2010

13

Comparison of bursting pressure of sutured, stapled and BAR anastomoses

C. A. Bundy, D. M. Jacobs, R. T. Zera, M. P. Bubrick

Journal:

International Journal of Colorectal Disease

Year:

1993

Language:

english

File:

PDF, 308 KB

english, 1993

14

Environmental Metabonomics: Applying Combination Biomarker Analysis in Earthworms at a Metal Contaminated Site

Jacob G. Bundy, David J. Spurgeon, Claus Svendsen, Peter K. Hankard, Jason M. Weeks, Daniel Osborn, John C. Lindon, Jeremy K. Nicholson

Journal:

Year:

2004

Language:

english

File:

PDF, 218 KB

english, 2004

15

NMR-derived developmental metabolic trajectories: an approach for visualizing the toxic actions of trichloroethylene during embryogenesis

Mark R. Viant, Jacob G. Bundy, Christopher A. Pincetich, Jeffrey S. de Ropp, Ronald S. Tjeerdema

Journal:

Year:

2005

Language:

english

File:

PDF, 302 KB

english, 2005

16

Standard reporting requirements for biological samples in metabolomics experiments: environmental context

Norman Morrison, Dan Bearden, Jacob G. Bundy, Tim Collette, Felicity Currie, Matthew P. Davey, Nathan S. Haigh, David Hancock, Oliver A. H. Jones, Simone Rochfort, Susanna-Assunta Sansone, Dalibor Šty

Journal:

Year:

2007

Language:

english

File:

PDF, 163 KB

english, 2007

17

Validation of metabolomics for toxic mechanism of action screening with the earthwormLumbricus rubellus

Qi Guo, Jasmin K. Sidhu, Timothy M. D. Ebbels, Faisal Rana, David J. Spurgeon, Claus Svendsen, Stephen R. Stürzenbaum, Peter Kille, A. John Morgan, Jacob G. Bundy

Journal:

Year:

2009

Language:

english

File:

PDF, 1023 KB

english, 2009

18

Environmental metabolomics: a critical review and future perspectives

Jacob G. Bundy, Matthew P. Davey, Mark R. Viant

Journal:

Year:

2009

Language:

english

File:

PDF, 370 KB

english, 2009

19

ToF-SIMS analysis of biomolecules in the model organism Caenorhabditis elegans

Florian M. Geier, Sarah Fearn, Jacob G. Bundy, David S. McPhail

Journal:

Surface and Interface Analysis

Year:

2012

Language:

english

File:

PDF, 142 KB

english, 2012

20

Outdoor and indoor cadmium distributions near an abandoned smelting works and their relations to human exposure

David J. Spurgeon, Alan Lawlor, Helen L. Hooper, Richard Wadsworth, Claus Svendsen, Laura D.K. Thomas, James K. Ellis, Jacob G. Bundy, Hector C. Keun, Lars Jarup

Journal:

Environmental Pollution

Year:

2011

Language:

english

File:

PDF, 455 KB

english, 2011

21

Metabolomic profiling of rapid cold hardening and cold shock in Drosophila melanogaster

Johannes Overgaard, Anders Malmendal, Jesper G. Sørensen, Jacob G. Bundy, Volker Loeschcke, Niels Chr. Nielsen, Martin Holmstrup

Journal:

Journal of Insect Physiology

Year:

2007

Language:

english

File:

PDF, 375 KB

english, 2007

22

Fluorodeoxyuridine affects the identification of metabolic responses to daf-2 status in Caenorhabditis elegans

Sarah K. Davies, Armand M. Leroi, Jacob G. Bundy

Journal:

Mechanisms of Ageing and Development

Year:

2012

Language:

english

File:

PDF, 538 KB

english, 2012

23

Establishing principal soil quality parameters influencing earthworms in urban soils using bioassays

Peter K. Hankard, Jacob G. Bundy, David J. Spurgeon, Jason M. Weeks, Julian Wright, Claire Weinberg, Claus Svendsen

Journal:

Environmental Pollution

Year:

2005

Language:

english

File:

PDF, 612 KB

english, 2005

24

Earthworm species of the genus Eisenia can be phenotypically differentiated by metabolic profiling

Jacob G Bundy, David J Spurgeon, Claus Svendsen, Peter K Hankard, Daniel Osborn, John C Lindon, Jeremy K Nicholson

Journal:

Year:

2002

Language:

english

File:

PDF, 445 KB

english, 2002

25

Development of QSARs to investigate the bacterial toxicity and biotransformation potential of aromatic heterocylic compounds

Jacob G. Bundy, Alistair W.J. Morriss, David G. Durham, Colin D. Campbell, Graeme I. Paton

Journal:

Year:

2001

Language:

english

File:

PDF, 155 KB

english, 2001

26

Evaluation of Metallic and Polymeric Biomaterial Surface Energy and Surface Roughness Characteristics for Directed Cell Adhesion

Hallab, Nadim J., Bundy, Kirk J., O'Connor, Kim, Moses, Randy L., Jacobs, Joshua J.

Journal:

Tissue Engineering

Year:

2001

Language:

english

File:

PDF, 595 KB

english, 2001

27

Artificial microRNA-mediated knockdown of pyruvate formate lyase (PFL1) provides evidence for an active 3-hydroxybutyrate production pathway in the green alga Chlamydomonas reinhardtii

Steven J. Burgess, Gregory Tredwell, Attila Molnàr, Jacob G. Bundy, Peter J. Nixon

Journal:

Journal of Biotechnology

Year:

2012

Language:

english

File:

PDF, 829 KB

english, 2012

28

Tissue disruption and extraction methods for metabolic profiling of an invertebrate sentinel species

Liebeke, Manuel, Bundy, Jacob G.

Journal:

Year:

2012

Language:

english

File:

PDF, 885 KB

english, 2012

29

Metabolic profiling detects early effects of environmental and lifestyle exposure to cadmium in a human population

James K Ellis, Toby J Athersuch, Laura DK Thomas, Friederike Teichert, Miriam Pérez-Trujillo, Claus Svendsen, David J Spurgeon, Rajinder Singh, Lars Järup, Jacob G Bundy, Hector C Keun

Journal:

Year:

2012

Language:

english

File:

PDF, 2.41 MB

english, 2012

30

Metabolic profiling of Pseudomonas aeruginosa demonstrates that the anti-sigma factor MucA modulates osmotic stress tolerance

Behrends, Volker, Ryall, Ben, Wang, Xinzhu, Bundy, Jacob G., Williams, Huw D.

Journal:

Molecular BioSystems

Year:

2010

Language:

english

File:

PDF, 1.35 MB

english, 2010

31

The Development of Metabolomic Sampling Procedures for Pichia pastoris, and Baseline Metabolome Data

Tredwell, Gregory D., Edwards-Jones, Bryn, Leak, David J., Bundy, Jacob G., Andersen, Mikael

Journal:

Year:

2011

Language:

english

File:

PDF, 2.63 MB

english, 2011

32

Combining Spectral Ordering with Peak Fitting for One-Dimensional NMR Quantitative Metabolomics

Liebeke, Manuel, Hao, Jie, Ebbels, Timothy M. D., Bundy, Jacob G.

Journal:

Analytical Chemistry

Year:

2013

Language:

english

File:

PDF, 1.47 MB

english, 2013

33

Cross-Platform Comparison of Caenorhabditis elegans Tissue Extraction Strategies for Comprehensive Metabolome Coverage

Geier, Florian M., Want, Elizabeth J., Leroi, Armand M., Bundy, Jacob G.

Journal:

Analytical Chemistry

Year:

2011

Language:

english

File:

PDF, 938 KB

english, 2011

34

Metabolic Profile Biomarkers of Metal Contamination in a Sentinel Terrestrial Species Are Applicable Across Multiple Sites

Bundy, Jacob G., Keun, Hector C., Sidhu, Jasmin K., Spurgeon, David J., Svendsen, Claus, Kille, Peter, Morgan, A. John

Journal:

Environmental Science & Technology

Year:

2007

Language:

english

File:

PDF, 251 KB

english, 2007

35

International NMR-Based Environmental Metabolomics Intercomparison Exercise

Viant, Mark R., Bearden, Daniel W., Bundy, Jacob G., Burton, Ian W., Collette, Timothy W., Ekman, Drew R., Ezernieks, Vilnis, Karakach, Tobias K., Lin, Ching Yu, Rochfort, Simone, Ropp, Jeffrey S. de,

Journal:

Environmental Science & Technology

Year:

2009

Language:

english

File:

PDF, 224 KB

english, 2009

36

Metallothioneins May Not Be Enough—The Role of Phytochelatins in Invertebrate Metal Detoxification

Bundy, Jacob G., Kille, Peter, Liebeke, Manuel, Spurgeon, David J.

Journal:

Environmental Science & Technology

Year:

2014

Language:

english

File:

PDF, 693 KB

english, 2014

37

Biochemical diversity of betaines in earthworms

Liebeke, Manuel, Bundy, Jacob G.

Journal:

Biochemical and Biophysical Research Communications

Year:

2013

Language:

english

File:

PDF, 645 KB

english, 2013

38

Free Glucosylglycerate Is a Novel Marker of Nitrogen Stress in Mycobacterium smegmatis

Behrends, Volker, Williams, Kerstin J., Jenkins, Victoria A., Robertson, Brian D., Bundy, Jacob G.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.44 MB

english, 2012

39

The Cellular Geometry of Growth Drives the Amino Acid Economy of Caenorhabditis elegans

Jonathan Swire, Silke Fuchs, Jacob G. Bundy and Armand M. Leroi

Journal:

Proceedings Biological Sciences

Year:

2009

Language:

english

File:

PDF, 1.52 MB

english, 2009

40

DNA sequence variation and methylation in an arsenic tolerant earthworm population

Kille, Peter, Andre, Jane, Anderson, Craig, Ang, Hui Na, Bruford, Michael W., Bundy, Jacob G., Donnelly, Robert, Hodson, Mark E., Juma, Gabriela, Lahive, Elma, Morgan, A. John, Stürzenbaum, Stephen R.

Journal:

Soil Biology and Biochemistry

Year:

2013

Language:

english

File:

PDF, 648 KB

english, 2013

41

Bayesian deconvolution and quantification of metabolites in complex 1D NMR spectra using BATMAN

Hao, Jie, Liebeke, Manuel, Astle, William, De Iorio, Maria, Bundy, Jacob G, Ebbels, Timothy M D

Journal:

Nature Protocols

Year:

2014

Language:

english

File:

PDF, 1.35 MB

english, 2014

42

The Metabolomic Responses of Caenorhabditis elegans to Cadmium Are Largely Independent of Metallothionein Status, but Dominated by Changes in Cystathionine and Phytochelatins

Hughes, Samantha L., Bundy, Jacob G., Want, Elizabeth J., Kille, Peter, Stürzenbaum, Stephen R.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 372 KB

english, 2009

43

Between-Person Comparison of Metabolite Fitting for NMR-Based Quantitative Metabolomics

Tredwell, Gregory D., Behrends, Volker, Geier, Florian M., Liebeke, Manuel, Bundy, Jacob G.

Journal:

Analytical Chemistry

Year:

2011

Language:

english

File:

PDF, 1.51 MB

english, 2011

44

Analysis of intact bacteria using rapid evaporative ionisation mass spectrometry

Strittmatter, Nicole, Jones, Emrys A., Veselkov, Kirill A., Rebec, Monica, Bundy, Jacob G., Takats, Zoltan

Journal:

Chemical Communications

Year:

2013

Language:

english

File:

PDF, 1.30 MB

english, 2013

45

Comparison of response of six different luminescent bacterial bioassays to bioremediation of five contrasting oils

Bundy, Jacob G., Campbell, Colin D., Paton, Graeme I.

Journal:

Journal of Environmental Monitoring

Year:

2001

Language:

english

File:

PDF, 125 KB

english, 2001

46

A metabolic trade-off between phosphate and glucose utilization in Escherichia coli

Behrends, Volker, Maharjan, Ram P., Ryall, Ben, Feng, Lu, Liu, Bin, Wang, Lei, Bundy, Jacob G., Ferenci, Thomas

Journal:

Molecular BioSystems

Year:

2014

Language:

english

File:

PDF, 1.57 MB

english, 2014

47

C. elegans metallothioneins: response to and defence against ROS toxicity

Zeitoun-Ghandour, Sukaina, Leszczyszyn, Oksana I., Blindauer, Claudia A., Geier, Florian M., Bundy, Jacob G., Stürzenbaum, Stephen R.

Journal:

Molecular BioSystems

Year:

2011

Language:

english

File:

PDF, 2.00 MB

english, 2011

48

Identification of hydroxyapatite spherules provides new insight into subretinal pigment epithelial deposit formation in the aging eye

Thompson, Richard B., Reffatto, Valentina, Bundy, Jacob G., Kortvely, Elod, Flinn, Jane M., Lanzirotti, Antonio, Jones, Emrys A., McPhail, David S., Fearn, Sarah, Boldt, Karsten, Ueffing, Marius, Ratu

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.39 MB

english, 2015

49

A modified Bohlman technique using a novel implant for treatment of high-grade spondylolisthesis

Hire, Justin M., Jacobs, Jeremy M., Bundy, Justin V., DeVine, John G.

Journal:

Journal of Neurosurgery Spine

Year:

2015

Language:

english

File:

PDF, 1.47 MB

english, 2015

50

Species Interactions Alter Evolutionary Responses to a Novel Environment

Lawrence, Diane, Fiegna, Francesca, Behrends, Volker, Bundy, Jacob G., Phillimore, Albert B., Bell, Thomas, Barraclough, Timothy G., Ellner, Stephen P.

Journal:

Year:

2012

Language:

english

File:

PDF, 433 KB

english, 2012

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